SW4414 : Advanced Ecology of Soil Bacteria

Department

Department of Soil and Water

Academic Program

Master in Soil Science

Type

Elective

Credits

03

Prerequisite

Overview

This course deals with the diversity of bacteria in the soil environment and the physiological variation of soil bacteria in terms of metabolism, acquisition of energy and resources, growth and reproduction. It also deals with evolution in the context of microbial ecology and in the soil environment as a medium for microbial growth and stress tolerance, also the living of microbes in harsh environments and interactions between different microbes in the soil and microbial interactions with other organisms and sending signals between soil organisms. As well as, the role that different types of bacteria play in biogeochemical cycles and the response of soil bacteria to disturbance. The course also covers some important environmental phenomena that affect or are affected by other environments outside the soil environment, such as the impact of climate change on processes mediated by soil bacteria, applications of soil microbiome ecology and its relationship to the human microbiome, and modeling of microbial processes.

Intended learning outcomes

By the end of the course the student will be able to:

A. Knowledge & understand

A.1.

Show how soil bacteria respond physiologically and functionally to environmental stresses and disturbances.

A.2.

Compare how the evolution of bacteria differs from that of other, more complex organisms.

A.3.

Identify the factors and processes that lead to soil bacterial community formation.

A.4.

Illustrate the role of soil bacterial species involved in major biogeochemical cycles and their potential response to climate change

A.5.

Polymorphism for evaluation and modeling diversity

A.6.

Describe concepts models of bacterial microbial processes.

A.7.

Compare findings of current scientific papers in microbial ecology in a review study or a new study addressing relevant issues in the field.

B. Mental skills

B.1.

Detail how soil bacteria interact with their environment

B.2.

Discuss and criticizes specialized references in microbial ecology

B.3.

evaluate a variety of basic biological processes that depend on microbial-bacterial interactions

B.4.

-

C. Practical & professional skills

C.1.

Diagnose the physiological and functional response of soil bacteria to environmental stressors and disturbances.

C.2.

Find how the evolution of bacteria differs from the evolution of other, more complex organisms

C.3.

Propose factors and processes that lead to soil bacterial community formation.

C.4.

Integrate climate change and potential responses of species of soil bacteria involved in major biogeochemical cycles.

D. Generic and transferable skills

D.1.

Possess the ability to use the computer to search for information related to the course

D.2.

possess the ability to make presentations

D.3.

Able to work as a team and respects the opinions of others

D.4.

Write reports and working papers on the course vocabulary

D.5.

Use critical thinking and problem-solving skills when dealing with information, concepts and theories related to the course

Teaching and learning methods

1. Lectures

2. Laboratory activities

3. Data collection

4. Case Study

Methods of assessments

N

Evaluation methods

Percentage

1

First midterm exam )After the fifth week of study(

25%

2

Second midterm exam ) After the tenth week of study(

15%

3

Practical exam (After the twelfth week of study)

10%

4

Final exam (After the twelfth week of study)

50%

Total

100%